I would like to use pandas to explore my data, but I did not find a convenient tool to do gene set enrichment analysis in python.
I want something like this:
- Ability to run inside python console without switching to R.
- User friendly for both wet and dry lab users.
- Produce or reproduce publishable figures.
- Perform batch jobs easy.
- Command line support (Win, Mac, Linux).
That’s why GSEApy comes to play. See code here
