My bioinformatic workflows using snakemake. I would update it if only I have more time.
Why snakemake?
Good:
- Community
- Easy to use and update
- Reusable workflows
- Scalable
- Support conda env
- Support slurm, qsub …
- python syntax
Drawback:
- Hard to debug workflows.
TODO:
- Integrate snakemake-wrappers to current workflows to make it more reproducible.
See code here
